DomIns: A Web Resource for Domain
Insertions in Known Protein Structures

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Related Literature

1. Berman, H. M., Battistuz, T., Bhat, T. N., Bluhm, W. F., Bourne, P. E., Burkhardt, K., Feng, Z., Gilliland, G. L., Iype, L., Jain, S., Fagan, P., Marvin, J., Padilla, D., Ravichandran, V., Schneider, B., Thanki, N., Weissig, H., Westbrook, J. D., and Zardecki, C. (2002) The Protein Data Bank. Acta Crystallogr D Biol Crystallogr 58, 899-907.

2. Murzin, A. G., Brenner, S. E., Hubbard, T., and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247, 536-540.

3. Lo Conte, L., Brenner, S. E., Hubbard, T. J., Chothia, C., and Murzin, A. G. (2002) SCOP database in 2002: refinements accommodate structural genomics. Nucleic Acids Res 30, 264-267.

4. Orengo, C. A., Michie, A. D., Jones, S., Jones, D. T., Swindells, M. B., and Thornton, J. M. (1997) CATH--a hierarchic classification of protein domain structures. Structure 5, 1093-1108.

5. Thornton, J. M., Orengo, C. A., Todd, A. E., and Pearl, F. M. (1999) Protein folds, functions and evolution. J Mol Biol 293, 333-342.

6. Chandonia, J. M., Walker, N. S., Lo Conte, L., Koehl, P., Levitt, M., and Brenner, S. E. (2002) ASTRAL compendium enhancements. Nucleic Acids Res 30, 260-263.

7. Wang, Y., Anderson, J. B., Chen, J., Geer, L. Y., He, S., Hurwitz, D. I., Liebert, C. A., Madej, T. A., Marchler, G. H., Marchler-Bauer, A., Panchenko, A. R., Shoemaker, B. A., Song, J. S., Thiessen, P. A., Yamashita, R. A., and Bryant, S. H. (2002). MMDB: Entrez's 3D-structure database. Nucleic Acids Res 30, 249-252.

8. Janin, J., and Chothia, C. (1985) Domains in proteins: definitions, location, and structural principles. Methods Enzymol 115, 420-430.

9. Wetlaufer, D. B. (1973) Nucleation, rapid folding, and globular intrachain regions in proteins. Proc Natl Acad Sci U S A 70, 697-701.

10. Russell, R. B. (1994) Domain insertion. Protein Eng 7, 1407-1410.

11. Hobohm, U., and Sander, C. (1994) Enlarged representative set of protein structures. Protein Sci 3, 522-524.

12. Walther, D. (1997) WebMol - a Java based PDB viewer. Trends Biochem Sci., 22, 274-275.

13. Andreeva A., Howorth D., Brenner S.E., Hubbard T.J.P., Chothia C., Murzin A.G. (2004). SCOP database in 2004: refinements integrate structure and sequence family data. Nucl. Acid Res. 32:D226-D229. [PDF].


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